Interactions¶

Detect and visualize non-covalent interactions.

Commands¶

Find hydrogen bonds.

/interactions hbonds
/interactions hbonds ligand
/interactions hbonds chain A 3.5

Find salt bridges (charged residue pairs).

/interactions saltbridges
/interactions saltbridges protein

Find pi-stacking interactions.

/interactions pistacking
/interactions pistacking ligand

Find cation-pi interactions.

/interactions cationpi

Find hydrophobic contacts.

/interactions hydrophobic ligand 4.0

Find halogen bonds.

/interactions halogen ligand

Generate a summary of all interaction types.

/interactions summary
/interactions summary ligand

Outputs a table with counts of each interaction type found.